PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168877.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 738aa MW: 83460.2 Da PI: 8.2002

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.5	3.9e-17	105	201	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY++YA vGF+ rk + +++ r+g +++r+ Cs+eg++++ ++ +r+r+++r+gCka+++ k++++g ++v+ le+ H+H XP_019168877.1 105 FYKQYAGYVGFDCRKGTIRRR-RDGVVVERQVFCSREGFKQSIYSTqstcvgdgkPIVVKRRRVTNRVGCKARVVFKRKSNGLFVVHFLEERHTH 198 9*************99886.9999***********98888889999887556678999***************************** PP FAR1 88 ela 90 ++ XP_019168877.1 199 VMC 201 998 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MDPVGFVCDK DTSIDAGVEG SGGHIDGCVE GSGSQCDEGN STDVAVETSG QGASEHCLTD 60 VEAEDNACVL ETSPGLTKYW RPVCTDSLKP MVGQTFDSLD CAIVFYKQYA GYVGFDCRKG 120 TIRRRRDGVV VERQVFCSRE GFKQSIYSTQ STCVGDGKPI VVKRRRVTNR VGCKARVVFK 180 RKSNGLFVVH FLEERHTHVM CSIIAKQFLK VNRSLDTGHQ MFIASCVRAN IGYVRSYKLF 240 KEIVGEYSNV GATGVDFKNF KRDLMAYILN GDAQLFIDTL FKRRELCEAF EFEYDVDDVD 300 QLTRVFWADA VSRKNFALFG DVVLFDATYR SNRYNLVFVP FTGIDNHKRS ITFGAGLLTR 360 EDIDSYVWLL ERFKKTMRHE PICVVTDQDP AVKIAVARVF GTSKHRFCMW HIMCKVGEKV 420 GPVLAKDKVF RRKLNGIVWN KSIDSKTFED LWSRIIEEYG LGDNGWFRYL FESRTFWASP 480 YFHDEFMSGF VRTTSRSESQ NSFFGSFSNG HSSLVEFLVH FDSAISAQRH AQAKLTADSE 540 SCFPVLKTPL ALEKHAMDVY TISVFYDVQV EICEGCFSCR VVSLCECEGK VCYGIKDGDK 600 KAWHIFFVFK DHGLERIPSM YLVSRWTKGA SLKPIFDIDD TVVDQSAKVD NVRVLTNLMR 660 SEIYACVGLA DGNVERLEKL RRGSTVEVRD PIKAKNKGGG KRMKSAREKA VNKCVKQSRK 720 CHTCDEYGHN SRTCPLNG

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MDPVGFVCDK DTSIDAGVEG SGGHIDGCVE GSGSQCDEGN STDVAVETSG QGASEHCLTD  60
VEAEDNACVL ETSPGLTKYW RPVCTDSLKP MVGQTFDSLD CAIVFYKQYA GYVGFDCRKG  120
TIRRRRDGVV VERQVFCSRE GFKQSIYSTQ STCVGDGKPI VVKRRRVTNR VGCKARVVFK  180
RKSNGLFVVH FLEERHTHVM CSIIAKQFLK VNRSLDTGHQ MFIASCVRAN IGYVRSYKLF  240
KEIVGEYSNV GATGVDFKNF KRDLMAYILN GDAQLFIDTL FKRRELCEAF EFEYDVDDVD  300
QLTRVFWADA VSRKNFALFG DVVLFDATYR SNRYNLVFVP FTGIDNHKRS ITFGAGLLTR  360
EDIDSYVWLL ERFKKTMRHE PICVVTDQDP AVKIAVARVF GTSKHRFCMW HIMCKVGEKV  420
GPVLAKDKVF RRKLNGIVWN KSIDSKTFED LWSRIIEEYG LGDNGWFRYL FESRTFWASP  480
YFHDEFMSGF VRTTSRSESQ NSFFGSFSNG HSSLVEFLVH FDSAISAQRH AQAKLTADSE  540
SCFPVLKTPL ALEKHAMDVY TISVFYDVQV EICEGCFSCR VVSLCECEGK VCYGIKDGDK  600
KAWHIFFVFK DHGLERIPSM YLVSRWTKGA SLKPIFDIDD TVVDQSAKVD NVRVLTNLMR  660
SEIYACVGLA DGNVERLEKL RRGSTVEVRD PIKAKNKGGG KRMKSAREKA VNKCVKQSRK  720
CHTCDEYGHN SRTCPLNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	167	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-73	FAR1 family protein