PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019168886.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 245aa    MW: 28368.5 Da    PI: 8.8725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019168886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-12115199177
                     EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
              B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                     f+k+ t  dv+++ +rl+l+k+ +++         +++ +++ +t ++++g+++e++++ +  ++ yvl +GWk+F ++ngL ++
  XP_019168886.1 115 FEKQVTVTDVNEEqNRLSLSKNEVTRSilpllncHEDHCRGVPVTAYNPDGKEYEMTFKSWSERKFYVLNGGWKRFFQENGLVVR 199
                     677777777766659********98889***999666778999***************************************865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MAKKTHHAAF QPPEPENIEE EEDLAAAANI LICMSAANLE KREAIELERM KMNFHYNSGL  60
RIRDDNNNNN NRAEPPALAA RVHSRCSVDG TPLPRYPPIP FLLGKIDLSA CSMPFEKQVT  120
VTDVNEEQNR LSLSKNEVTR SILPLLNCHE DHCRGVPVTA YNPDGKEYEM TFKSWSERKF  180
YVLNGGWKRF FQENGLVVRR HWVTVWMFRH SQTRKLCFAL TWKFIPMDHP CTIKQVRNSK  240
SVSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.18e-30B3 family protein