PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168946.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 657aa MW: 74264 Da PI: 7.633

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.1e-21	57	141	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019168946.1 57 VYNSYAYTLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 141 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MEDGTEQTNS AVDDWHSIQV SEGIVDGSVD VDGSSSITVD QDLVGLVVSN ADEAFEVYNS 60 YAYTLGFSVR KGHQRYKGSS NTIQMKKFCC SKAGYKANSG VKAYSKIDTR TGCGAFVQFD 120 VGDDGLWTVT KHEKVHNHEL CVFNKSHLLR SHRSVGDNQL LYLQGLKDSG VALADGIRRR 180 QSTETDFFFD FELDLDARLC SFFWRDGQMR RDYEVFGDLS MGGKSPQTIM TDQCAAMAAA 240 ISKVFPTSRH RLCIWHIGEN SKKHIKTLRS NKDFLDMFNY VLKYTETEAE FQFYWTRLVT 300 DYKCHKNTWL EKLYDCREKW CPAFNKDYFS GGILSSQRSE TTNHSIFLGA FYSSFVSVIS 360 EWRSKENGED FRCAQGVPAM MMEHVKLLSH AREVYTIEIY FLFEEQFMKG SACHQEMVLN 420 DGRQQKYHVW RPDIDIIRHE VSFNAANLDI SCSCKLMSEL GILCCHCIRI LHVHCVSSIP 480 DKYILKRWTK KVIDGRNVNI DSMVYNVGVP PSIWVFDISR KFQRLVVSSQ DSSVARKLCD 540 EAVDDVKKKV EAEVGHVHIE ECGVSSSSGG VQNPSSRRLK GERNKRRSGV IEKKYSLARG 600 RRSAANKAAL STKGAVQSLV LENISKLAGD GYLVHPSSSS SDFVQFSKGL DDNVGVD

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MEDGTEQTNS AVDDWHSIQV SEGIVDGSVD VDGSSSITVD QDLVGLVVSN ADEAFEVYNS  60
YAYTLGFSVR KGHQRYKGSS NTIQMKKFCC SKAGYKANSG VKAYSKIDTR TGCGAFVQFD  120
VGDDGLWTVT KHEKVHNHEL CVFNKSHLLR SHRSVGDNQL LYLQGLKDSG VALADGIRRR  180
QSTETDFFFD FELDLDARLC SFFWRDGQMR RDYEVFGDLS MGGKSPQTIM TDQCAAMAAA  240
ISKVFPTSRH RLCIWHIGEN SKKHIKTLRS NKDFLDMFNY VLKYTETEAE FQFYWTRLVT  300
DYKCHKNTWL EKLYDCREKW CPAFNKDYFS GGILSSQRSE TTNHSIFLGA FYSSFVSVIS  360
EWRSKENGED FRCAQGVPAM MMEHVKLLSH AREVYTIEIY FLFEEQFMKG SACHQEMVLN  420
DGRQQKYHVW RPDIDIIRHE VSFNAANLDI SCSCKLMSEL GILCCHCIRI LHVHCVSSIP  480
DKYILKRWTK KVIDGRNVNI DSMVYNVGVP PSIWVFDISR KFQRLVVSSQ DSSVARKLCD  540
EAVDDVKKKV EAEVGHVHIE ECGVSSSSGG VQNPSSRRLK GERNKRRSGV IEKKYSLARG  600
RRSAANKAAL STKGAVQSLV LENISKLAGD GYLVHPSSSS SDFVQFSKGL DDNVGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	1e-35	FAR1 family protein