PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169031.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 222aa MW: 25582 Da PI: 8.3424

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.8e-19	68	120	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t++q++ Le F+ n +++ +++ +LA++lgL+ rqV +W+qN+Ra++k+ XP_019169031.1 68 KRLTQDQVRLLEISFKANTKLDPDRKSQLAQELGLPPRQVAIWYQNKRARWKN 120 579************************************************95 PP
2	HD-ZIP_I/II	109.8	1.9e-35	67	157	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +rl+++qv+lLE sF++++kL+p+rK++la+eLgl prqva+W+qn+RAR+k++ lE+d++a++++++ +++en+rLe+ev++Lreel++ XP_019169031.1 67 NKRLTQDQVRLLEISFKANTKLDPDRKSQLAQELGLPPRQVAIWYQNKRARWKNQSLEVDHKAMQQRLNGVAAENQRLEREVHRLREELSR 157 69*************************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MKTMATISSS TFFIFLINLE VTFNLILSTY FYICLVESFL FLHHHQTSRM DYFNSQQARK 60 TLLKCHNKRL TQDQVRLLEI SFKANTKLDP DRKSQLAQEL GLPPRQVAIW YQNKRARWKN 120 QSLEVDHKAM QQRLNGVAAE NQRLEREVHR LREELSRTQE MLFSLNATAY SSLSSSGDDG 180 GSCSDLLHDS KDLYACLIDD HEGQIGKSAD AHNFFRLAGP HG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-23	HD-ZIP family protein