PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169050.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 283aa MW: 32005.5 Da PI: 9.9326

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.7	1.3e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed l +++ +G g+W++ ++ g+ R++k+c++rw +yl XP_019169050.1 14 KGPWSAKEDSMLTTYIQHHGVGHWRSLPKNAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56.8	5.2e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eEd+l+v+++ + G++ W++Ia +++ gRt++++k++w+++l XP_019169050.1 67 RGNFTPEEDDLIVRLHSLIGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MGRAPCCSKV GLKKGPWSAK EDSMLTTYIQ HHGVGHWRSL PKNAGLLRCG KSCRLRWMNY 60 LRPGIKRGNF TPEEDDLIVR LHSLIGNRWS LIAGRLPGRT DNEIKNYWNT HLLKKLKSAG 120 FESKPRKTSR TIPKKKKKTA KPDKTRSEKR KKLRHVSKPD VGNGIQDRPE MIKVYAPRPI 180 RLSTGFARNY SFDDLATSAA SSSSGNNKAT LNDNGNNNNN GEELTVIPWH LYEVGDDLLD 240 DYMDGCDLSA RYSLPTSDTL MEKVYDEYLQ LLSEDCCLQT CSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	152	KKKKKTAKPDKTRSEKRKK
2	134	153	KKKKKTAKPDKTRSEKRKKL
3	135	153	KKKKKTAKPDKTRSEKRKK
4	135	154	KKKKKTAKPDKTRSEKRKKL
5	136	154	KKKKKTAKPDKTRSEKRKK
6	136	155	KKKKKTAKPDKTRSEKRKKL
7	137	156	KKKKKTAKPDKTRSEKRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-62	MYB family protein