PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169106.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 426aa MW: 47225.4 Da PI: 8.041

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169106.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.9	2.2e-17	71	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_019169106.1 71 SVYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 130 78*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MASSSSEPTA KPEGSSGNDV CGGETSETAG PTGSDQLSLY RVLKKAKKER VCTAKERISK 60 MPPCTAGKRS SVYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA 120 YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NLSREDYLAS LRRKSSGFSR GISKYRPLSS 180 RWDSQFGRLQ GADYFSSKHH GDCGDVTADN EYVAGYCMDQ KIDLSSYIKW WGASKARQAD 240 SYVKGTSEET KHGCSEDTGN EASELAVQPT EPYEMPRLGL SQKGKSHKSS TTSAMSILSQ 300 CAAYKNLQEK VAKKKEKVEN DENENKNTIN KIDYGKTIEK SIHDAGNERL GALFGSSVGL 360 TINRNIHPLT PILSAPLLTN YNSIDALTDP VLWTSLVPVF PSGSSRATEV TKHESGSDYT 420 FFQQED

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MASSSSEPTA KPEGSSGNDV CGGETSETAG PTGSDQLSLY RVLKKAKKER VCTAKERISK  60
MPPCTAGKRS SVYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA  120
YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NLSREDYLAS LRRKSSGFSR GISKYRPLSS  180
RWDSQFGRLQ GADYFSSKHH GDCGDVTADN EYVAGYCMDQ KIDLSSYIKW WGASKARQAD  240
SYVKGTSEET KHGCSEDTGN EASELAVQPT EPYEMPRLGL SQKGKSHKSS TTSAMSILSQ  300
CAAYKNLQEK VAKKKEKVEN DENENKNTIN KIDYGKTIEK SIHDAGNERL GALFGSSVGL  360
TINRNIHPLT PILSAPLLTN YNSIDALTDP VLWTSLVPVF PSGSSRATEV TKHESGSDYT  420
FFQQED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-134	AP2 family protein