PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169114.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 167aa    MW: 18225.6 Da    PI: 8.2045
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.18.2e-45181171100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C +dCv+apyfp +qp+kfanvhk+FGasnv+k+l++lpee+r da+ss+vyeA+ar+rdP+yG++g i++lqqql+ ++++la
  XP_019169114.1  18 PCAACKLLRRRCGPDCVFAPYFPGDQPHKFANVHKVFGASNVSKMLQELPEEQRGDAVSSMVYEANARVRDPIYGCAGAISSLQQQLDVVRTQLA 112
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_019169114.1 113 MAQAE 117
                     99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MKESSWKRLS SPPSSSPPCA ACKLLRRRCG PDCVFAPYFP GDQPHKFANV HKVFGASNVS  60
KMLQELPEEQ RGDAVSSMVY EANARVRDPI YGCAGAISSL QQQLDVVRTQ LAMAQAEVVH  120
LRVRQAAAMS SSPQNSGSPP SIVMGSQPRG YFEVDTDVVD QPGYFYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-60LBD family protein