PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169214.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26237.7 Da    PI: 7.4179
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169214.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.74.7e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri++ s rqvtf+kRr g++KKA+ELS+LCd+ev +i+fs tgkl +yss
  XP_019169214.1  9 KRIDSLSARQVTFAKRRRGLFKKAHELSTLCDVEVGLIVFSATGKLSDYSS 59
                    79***********************************************96 PP
2K-box41.26.9e-151021762397
           K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      L ke++  +r +R+l GedL++L ++eL +Le+q e++l+++ ++K+++ l++++ l kke  l++en ++++ 
  XP_019169214.1 102 MLLKEYKDKERHLRQLNGEDLQELGMEELIRLEKQTERGLSRVQKTKDDIRLKEMSALMKKEATLKDENAQMKQF 176
                     5666777778999*********************************************************99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MVRQRIEIKR IDSLSARQVT FAKRRRGLFK KAHELSTLCD VEVGLIVFSA TGKLSDYSSS  60
SMVQVLARHN MHSEKNENDL EHHHHPQPPL QLQQDNGCTH AMLLKEYKDK ERHLRQLNGE  120
DLQELGMEEL IRLEKQTERG LSRVQKTKDD IRLKEMSALM KKEATLKDEN AQMKQFFDQM  180
GSSMAAQEDK PPPDQQGQYD DSVTKTYNLA HHNHLRDCNS DTFLTLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.19e-49MIKC_MADS family protein