PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169216.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26253.6 Da    PI: 6.8501
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF801.7e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri++ s rqvtf+kRr g++KKA+ELS+LCd+ev +i+fs tgkl +yss
  XP_019169216.1  9 KRIDSLSARQVTFAKRRRGLFKKAQELSTLCDVEVGLIVFSATGKLSDYSS 59
                    79***********************************************96 PP
2K-box43.91e-151001762197
           K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +a L +e++   + +R+l GedL++L ++eL +Le+q+e++l+++ ++K+++ l++++ l kke  l++en ++++ 
  XP_019169216.1 100 HAMLLEEYKDKDHHLRQLNGEDLQELGMEELIRLEKQMERGLSRVQKTKDDIRLKEMSALMKKEATLKDENAQMKQF 176
                     556666777777889*********************************************************99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MVRQRIEIKR IDSLSARQVT FAKRRRGLFK KAQELSTLCD VEVGLIVFSA TGKLSDYSSS  60
SMVQVLARHN MHSEKNENDL EHHHHPQPPL QLQQDNRYTH AMLLEEYKDK DHHLRQLNGE  120
DLQELGMEEL IRLEKQMERG LSRVQKTKDD IRLKEMSALM KKEATLKDEN AQMKQFFDQM  180
GSSMAAQEDK PPPDQQGQYD DSVTKTYNLA HNHHHDCNSD TFLTLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-51MIKC_MADS family protein