PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169240.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28650.3 Da    PI: 9.7759
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_019169240.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box104.91e-3493189499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkk 97 
                     +++ s +ea+++ +qqe++kL+++i+nLq+++R+++Ge+L+  +l++L++Le+++ek+++kiR+kKnell+++i+++qk+ e +l+++n++Lr+k
  XP_019169240.1  93 TNTGSISEANTQFYQQEANKLRQQISNLQNQNRNYMGEGLGGFNLRDLKNLESKIEKGISKIRAKKNELLFAEIDYMQKRqEIDLHNNNQYLRAK 187
                     3444599**********************************************************************9984679**********9 PP

           K-box  98 le 99 
                     + 
  XP_019169240.1 188 II 189
                     96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MEFQSDQSRE MSPQRKMGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVKA TIDRYKKACS DSTNTGSISE ANTQFYQQEA NKLRQQISNL  120
QNQNRNYMGE GLGGFNLRDL KNLESKIEKG ISKIRAKKNE LLFAEIDYMQ KRQEIDLHNN  180
NQYLRAKIIE TERAQQQQQQ MNLMPGSSSY HELAPPQQFD ARNYLQLDGF QSTSSYSKQD  240
HLPLQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-113MIKC_MADS family protein