PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169268.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 204aa MW: 22307.9 Da PI: 8.4058

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	95.9	7.8e-30	18	76	5	62
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla.aassk 62 +++CqdCGnqakkdC++ RCR CCksrgf+C thvkstWvp+++rr r+ + + ++ sk XP_019169268.1 18 GSRCQDCGNQAKKDCSFLRCRSCCKSRGFQCPTHVKSTWVPVSRRRPRHLAIHqTSFSK 76 569*******************************************9955444033333 PP
2	DUF702	69.4	1.1e-21	92	146	100	154
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++P+evs +a frcvr+ssv ++ +++aYq++v+i+G vfkGiLydqG+e+ XP_019169268.1 92 EVERNFPAEVSLPAEFRCVRLSSVGNEVDQFAYQSTVTIAGRVFKGILYDQGPES 146 23455************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MMRDNEEEEE GGAVGGSGSR CQDCGNQAKK DCSFLRCRSC CKSRGFQCPT HVKSTWVPVS 60 RRRPRHLAIH QTSFSKRTRQ LPIQTPPFSG SEVERNFPAE VSLPAEFRCV RLSSVGNEVD 120 QFAYQSTVTI AGRVFKGILY DQGPESRYDV TGESSSAGVQ HHNLITAAAV ADGGATTAAS 180 PHPYPSPFST FMPPGTHFFS YPKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-48	SRS family protein