PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169573.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 363aa MW: 40973.8 Da PI: 7.8846

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_019169573.1 14 KGLWSPEEDEKLIKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.4	9.2e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg +++eE+ l+v++++ lG++ W+ Ia++++ gRt++++k+ w+ XP_019169573.1 67 RGTFSQEEESLIVELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEESLIVE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG 120 IDPNTHKPLS EVENDQENPS AATKKTGIAS QDSGELSLME SEHHLLSPPA PEPNNNNTNL 180 SAMAPMDRFS ALPAAAPPQE FFPNTATKIP DLTAYLCFQQ MNNYSPSNNT NTNLFFNPNN 240 NNNNVPNSVL PPPSISNSNS SSFFEPNNGF PWEVCGKPEN KETEEIKWSD YLQTPFLLGN 300 TIHNIQAPHH HHHDLFNETK PETQFAAAQP SLPTTWLQND QHPSLYNNAK HFQRISAAFG 360 QFS

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEESLIVE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKPLS EVENDQENPS AATKKTGIAS QDSGELSLME SEHHLLSPPA PEPNNNNTNL  180
SAMAPMDRFS ALPAAAPPQE FFPNTATKIP DLTAYLCFQQ MNNYSPSNNT NTNLFFNPNN  240
NNNNVPNSVL PPPSISNSNS SSFFEPNNGF PWEVCGKPEN KETEEIKWSD YLQTPFLLGN  300
TIHNIQAPHH HHHDLFNETK PETQFAAAQP SLPTTWLQND QHPSLYNNAK HFQRISAAFG  360
QFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-89	MYB family protein