PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169641.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 209aa    MW: 23601.7 Da    PI: 7.7893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.6e-07451655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +++E++RRd+++s ++ L +llP+    + + +   + + +Av+YI+ Lq
  XP_019169641.1  4 KQVEKKRRDNLKSLYNHLFSLLPTHI--SLGGMALPDQVGEAVNYIQTLQ 51
                    689*********************84..5555777799*********998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MERKQVEKKR RDNLKSLYNH LFSLLPTHIS LGGMALPDQV GEAVNYIQTL QNQLEKNKQK  60
KQKLLLLMEQ QRKRPHYYSS SSSSSSSSSS NFCSNSTTKK PLIQVVDIAP DIDVVLIDGL  120
EDIAAFHNII AILNRHGLEV STAIFQPRGN STLQILHQQQ TKTVYEKLKQ AVNGSSGDEP  180
ESLDSWDYDI WGFPILETSQ GQLHNPPPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-11bHLH family protein