PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169685.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 497aa MW: 55965 Da PI: 10.6651

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169685.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.6	2.8e-08	7	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 ++rW t+E+++l av ++G+++W+ +a+++ ++ t++ ck r+ ++ XP_019169685.1 7 KMRWGTWEELILGGAVLRHGTDDWNVVASELRartvypNNFTPEACKARYEDL 59 68******************************888888888888888888766 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MVVGPKKMRW GTWEELILGG AVLRHGTDDW NVVASELRAR TVYPNNFTPE ACKARYEDLR 60 KQYSGCKFWF EELRKRRIEE LKRELERSEG SIGSLKSKIE ILKAERERSG QAESPVPLVK 120 SEGVELFQKE GSKDGLSAGS FTQNIRTDES HECQIPALTS ATETESKMEG SESCEREKVA 180 SISKLAGNKH GGTVKKRRGC RKRKDRVWDS KEGSIGESEN VCSTSAASIS PSKEASVGCD 240 QTRRPSSLDN HKGSLCSVKN NGLMDVFNSI AQREPALVFR HRLDSQKRAR YKKIIRRHMD 300 METIRSKLAT LSIKSSVELF RDLLLLANNA LVFYSKRTRE YKAALALRDL VTKAYRQQLY 360 RGSYTKTAFV LLPLPTICCP PVKPRSARPR PTKQRIPPAM LPNNNNNNNN KNAVPRSLEG 420 IKRQSDPPDS SPPLQSLLTA KRGCKQPGKA GKRASGNQVW RHRASEKEDS LHKTMSKGEM 480 GSKPVAKERK MTRQRLN

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MVVGPKKMRW GTWEELILGG AVLRHGTDDW NVVASELRAR TVYPNNFTPE ACKARYEDLR  60
KQYSGCKFWF EELRKRRIEE LKRELERSEG SIGSLKSKIE ILKAERERSG QAESPVPLVK  120
SEGVELFQKE GSKDGLSAGS FTQNIRTDES HECQIPALTS ATETESKMEG SESCEREKVA  180
SISKLAGNKH GGTVKKRRGC RKRKDRVWDS KEGSIGESEN VCSTSAASIS PSKEASVGCD  240
QTRRPSSLDN HKGSLCSVKN NGLMDVFNSI AQREPALVFR HRLDSQKRAR YKKIIRRHMD  300
METIRSKLAT LSIKSSVELF RDLLLLANNA LVFYSKRTRE YKAALALRDL VTKAYRQQLY  360
RGSYTKTAFV LLPLPTICCP PVKPRSARPR PTKQRIPPAM LPNNNNNNNN KNAVPRSLEG  420
IKRQSDPPDS SPPLQSLLTA KRGCKQPGKA GKRASGNQVW RHRASEKEDS LHKTMSKGEM  480
GSKPVAKERK MTRQRLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	2e-27	MYB_related family protein