PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169876.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LSD

Protein Properties

Length: 175aa MW: 18345.2 Da PI: 8.3345

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.3	1e-12	7	30	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ XP_019169876.1 7 CNGCRTILLYPRGASNVCCAVCNA 30 **********************97 PP
2	zf-LSD1	46.9	4.4e-15	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV XP_019169876.1 46 CGGCRTLLMHPRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	49	9.7e-16	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+++ XP_019169876.1 84 CGNCRTMLMYPSGAPSVKCAVCHFI 108 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
MQSQVVCNGC RTILLYPRGA SNVCCAVCNA LTPVPPPAME MAQLICGGCR TLLMHPRGAT 60 SVRCSCCHTV NLVPGPNQFA HVNCGNCRTM LMYPSGAPSV KCAVCHFITN VNQAGDTRAP 120 IQPHTPNGTA TSSSMTPSST ATSRPQNQTV VVQNPMSVDE SGNLVRNVVV GVTTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-59	LSD family protein