PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169949.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 662aa MW: 75384.7 Da PI: 6.1604

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67	4.9e-21	60	141	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + ++r+etrtgC a++k +++++++w+++++eleHnH + XP_019169949.1 60 FYNCYAKDQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKTEAN-----KPRPETRTGCPAMIKFRLMESKRWRLIEVELEHNHLI 141 9*************99997.66779*********998877.....9********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MDEVSLNTEP VLDDETEEFE IDGDCAMTEF VGQSGVIEGE NPLPPAVGME FETYDDVYYF 60 YNCYAKDQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK TEANKPRPET RTGCPAMIKF 120 RLMESKRWRL IEVELEHNHL IHARGGKFYK SHRNTTLGSK RPLQVDGAEV QKIMLFRTVI 180 VDTSENGITS VDENEFRNTE DQPGNQLSLK PGDAQAIHDL FAHLQLINPN FFYVMDLNER 240 GRLRNVFWAE ARCKAAYSYF GDIVSIDSTS LSDKYEVPLV VFAGVNHHGQ SVPLGCGLVA 300 GETIESFVWL LRAWLTYMVG RPPQTVLIGQ SKAMQTAVLD VFPRAAYCTP LSDIMKKFSD 360 ELGGLHEYEA IKASFTKAIS NASRVGEFVA AWEDMMGSHG IQGQKWLQTL YVDRKQWVPA 420 FLKDVFLAGV FEDKLSPFEG YLSKHTPLKE FVTNYVQALQ EIYQRESLAD MESRDPNCML 480 KSRFHFEAQL SKLYTRAIFK KFQCEIEGMF SCSSTKQVRI DGAVITHVIK EHRAEDDVRE 540 ARDYEVVLNM SDTEVVCDCG LFNSKGFLCR HALSVLSQNG VEEIPPQYIL PRWRKDIHRS 600 YVLDNGCHGI DVNNPVHRYD SLYKCAMKVV EEGQKSHHHY KFTMDALAEI LNKVCLEGDL 660 PG

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MDEVSLNTEP VLDDETEEFE IDGDCAMTEF VGQSGVIEGE NPLPPAVGME FETYDDVYYF  60
YNCYAKDQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK TEANKPRPET RTGCPAMIKF  120
RLMESKRWRL IEVELEHNHL IHARGGKFYK SHRNTTLGSK RPLQVDGAEV QKIMLFRTVI  180
VDTSENGITS VDENEFRNTE DQPGNQLSLK PGDAQAIHDL FAHLQLINPN FFYVMDLNER  240
GRLRNVFWAE ARCKAAYSYF GDIVSIDSTS LSDKYEVPLV VFAGVNHHGQ SVPLGCGLVA  300
GETIESFVWL LRAWLTYMVG RPPQTVLIGQ SKAMQTAVLD VFPRAAYCTP LSDIMKKFSD  360
ELGGLHEYEA IKASFTKAIS NASRVGEFVA AWEDMMGSHG IQGQKWLQTL YVDRKQWVPA  420
FLKDVFLAGV FEDKLSPFEG YLSKHTPLKE FVTNYVQALQ EIYQRESLAD MESRDPNCML  480
KSRFHFEAQL SKLYTRAIFK KFQCEIEGMF SCSSTKQVRI DGAVITHVIK EHRAEDDVRE  540
ARDYEVVLNM SDTEVVCDCG LFNSKGFLCR HALSVLSQNG VEEIPPQYIL PRWRKDIHRS  600
YVLDNGCHGI DVNNPVHRYD SLYKCAMKVV EEGQKSHHHY KFTMDALAEI LNKVCLEGDL  660
PG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein