PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169980.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 232aa    MW: 25544.4 Da    PI: 10.0647
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.5e-211562249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    r + +sn  vtfskRr g++KKA+ELS+LC++e+a+i+fs+  k++ +
  XP_019169980.1 15 RMSKESNLLVTFSKRRSGLFKKASELSTLCGVEIAIIVFSPGKKVFSF 62
                    567889999********************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MARKCKGRQK IEMTRMSKES NLLVTFSKRR SGLFKKASEL STLCGVEIAI IVFSPGKKVF  60
SFGHPCVDAI VDRFLARSPA AAAAPTAAAT NTSQLIEAHR NASVRELNVQ LMEILNQFEV  120
EKKRGEELTK MRKENQGKWW WESPVAELRL EELEQLKVAM EELKSGVGKQ MEKLVVEASN  180
PNLYFGAPSS SSSSSKGFGL FDDAKASGLG LSVTPHHLHG FASFGYGGRG FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-59M-type_MADS family protein