PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170060.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 140aa    MW: 15940.7 Da    PI: 7.8313
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.21e-4256131277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqve+C++d+++ak yhrrhkvCe+h+kap+vl++g++qrfCqqCsrfhel +fDe+krsCrrrLa+hnerrr+ +
  XP_019170060.1  56 CQVEDCTTDMTDAKPYHRRHKVCEIHAKAPSVLINGVQQRFCQQCSRFHELAQFDEAKRSCRRRLAGHNERRRRIT 131
                     *************************************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    
METSKPEGKR SINETDSVAE GGEDEDEDVE EDNKKKRALT LSGRKLTGGG STQLFCQVED  60
CTTDMTDAKP YHRRHKVCEI HAKAPSVLIN GVQQRFCQQC SRFHELAQFD EAKRSCRRRL  120
AGHNERRRRI TYDPRGEGST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.19e-44SBP family protein