PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170325.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 729aa    MW: 80054.8 Da    PI: 5.8881
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-1961116156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+ +++p+ ++r++L ++lgL+  qVk+WFqN+R+++k
  XP_019170325.1  61 KKRYHRHTQHQIQEMESFFKDCPHPDDKQRKDLGRRLGLEPLQVKFWFQNKRTQMK 116
                     688999***********************************************998 PP
2START222.41.4e-692504701206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+ +ep+W  s+    + + ++e++++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW++ +a    +a+tl
  XP_019170325.1 250 ELAVAAMEELIRMAQTGEPLWLPSPdnsiKVLCEEEYVRTFPRGIGpkplgLKSEASRESAVVIMNHVNLVEILMDVN-QWSNVFAgivsRAMTL 343
                     57899********************888888889*********999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d  ++ p    + R++++pSg+li++++ng+s+vtw+ehv
  XP_019170325.1 344 EVLSTGvagnynGALQVMSAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDTLRPSP----ISRCRRRPSGCLIQEMPNGYSRVTWIEHV 434
                     ************************************************************99....6**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+++r+lv+sgla+gak+w atl+rqce+
  XP_019170325.1 435 EVDDRAVHSIYRPLVNSGLAFGAKRWIATLDRQCER 470
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    
MFQPNMYESH HHLLDMSSHK NPENELDNII RDEEYESKSG TDIMEAPSGD DQDPNQRPNK  60
KKRYHRHTQH QIQEMESFFK DCPHPDDKQR KDLGRRLGLE PLQVKFWFQN KRTQMKAQHE  120
RSENSQLRAE NEKLRADNIR YQEALGNATC PNCGGPAAIG EMSFDEQQLR IENVRLREEI  180
ERITQIAAKF VGKPMLSYPN LPPPGATRSL DLGVGNFGHQ PGLSGELYSA GDLLRSVSGP  240
TDADKPMIIE LAVAAMEELI RMAQTGEPLW LPSPDNSIKV LCEEEYVRTF PRGIGPKPLG  300
LKSEASRESA VVIMNHVNLV EILMDVNQWS NVFAGIVSRA MTLEVLSTGV AGNYNGALQV  360
MSAEFQVPSP LVPTRENYFV RYCKQHTDGT WAVVDVSLDT LRPSPISRCR RRPSGCLIQE  420
MPNGYSRVTW IEHVEVDDRA VHSIYRPLVN SGLAFGAKRW IATLDRQCER LASSMANNIP  480
SVDGGVITSP EGRKSMLKLA ERMVMSFCAG VGASTAHTWT TLSGSGADDV RVMTRKSIDD  540
PGRPPGIVLS AATSFWLPVP PKRVFDFLRD ENSRSEWDIL SNGGLVQEMA HIANGRDPGN  600
SVSLLRVNSA NSSQSNMLIL QESCADSTGS FVIYAPVDIV AMNVVLSGGD PDYVALLPSG  660
FAILPDGPPG NGVLNPEIGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIKCTVERI  720
KGAVACDSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein