PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170359.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 750aa MW: 84742.8 Da PI: 8.519

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170359.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.1	1.6e-19	62	161	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA+ GF+vr+ + k+ r+g i +r + Cs++g r + + +++err+r ++r++Ckak+ ++k+++g + vt +++eH XP_019170359.1 62 EFYMNYARISGFDVRQGTLKRD-RDGVIFMRYLLCSRQGIRGGGRINrlpdrdvgrgKNRERRRRISNRVNCKAKICLRKKRSGDFIVTVFVEEH 155 6***************9998.9999**********998888899***************************************** PP FAR1 86 nHelap 91 +H+l++ XP_019170359.1 156 SHKLCS 161 **85 PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
MDDEDTGCST GCATEMLPVA DVAAPGAVGL ATSHSLQWKP NVDDSILPVV GRKFRTLEEG 60 IEFYMNYARI SGFDVRQGTL KRDRDGVIFM RYLLCSRQGI RGGGRINRLP DRDVGRGKNR 120 ERRRRISNRV NCKAKICLRK KRSGDFIVTV FVEEHSHKLC SEPSKMFMRI NRQLNVSQQA 180 FLANCVKTNI GASTGLRFCK EVAGSYGNVG ATDVEFHNFK RDLQTYVEVG DGEMIIEKFK 240 AKHEVCSDFY FDYQLDEDDR LARLFWADPS GRRAFSCYGD TISFDATYGT NRYSMVFVPF 300 TGVNNHKRCI TFGAGLLTKE DVDSYSWLLE RFKCAMGKTP LCVVTDQDPA LRVAIEEVLP 360 GSRHRFCMWH IMTKVPEKIG NELAKDEKFR NKLNAIVWNE RITSAEFEAQ WNLLMDEYNL 420 TTHRWFCKLY AERESWIPAY FTDLPLSGLV RTTSRSEAEN SVYGKFTRLH SSLVEFYMQY 480 ESVLETQCYR QAKLNAECEG YLPEFKTPLA LERHVAQLFT ITIFYELQKE IEAACFYSRV 540 VGVREDGGSI YYDIRGECNT IFSVHHDPKG LSASCTCKLF ERMGLVCRHM FLVFRDAQLE 600 QLPSQYIVTR WCKHLACGAC SGQLSVANGS TCGATQLWAE INTCVGLVGS NTERQARFID 660 VLKSLTVEFT SDGNTGGPIK GNRGAIQALC GVQAPQSITI KAPAQAKNKG TGKRIKSSRE 720 LAIEKNVKTG RKCGICGKYA HHNARSCPHK

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

MDDEDTGCST GCATEMLPVA DVAAPGAVGL ATSHSLQWKP NVDDSILPVV GRKFRTLEEG  60
IEFYMNYARI SGFDVRQGTL KRDRDGVIFM RYLLCSRQGI RGGGRINRLP DRDVGRGKNR  120
ERRRRISNRV NCKAKICLRK KRSGDFIVTV FVEEHSHKLC SEPSKMFMRI NRQLNVSQQA  180
FLANCVKTNI GASTGLRFCK EVAGSYGNVG ATDVEFHNFK RDLQTYVEVG DGEMIIEKFK  240
AKHEVCSDFY FDYQLDEDDR LARLFWADPS GRRAFSCYGD TISFDATYGT NRYSMVFVPF  300
TGVNNHKRCI TFGAGLLTKE DVDSYSWLLE RFKCAMGKTP LCVVTDQDPA LRVAIEEVLP  360
GSRHRFCMWH IMTKVPEKIG NELAKDEKFR NKLNAIVWNE RITSAEFEAQ WNLLMDEYNL  420
TTHRWFCKLY AERESWIPAY FTDLPLSGLV RTTSRSEAEN SVYGKFTRLH SSLVEFYMQY  480
ESVLETQCYR QAKLNAECEG YLPEFKTPLA LERHVAQLFT ITIFYELQKE IEAACFYSRV  540
VGVREDGGSI YYDIRGECNT IFSVHHDPKG LSASCTCKLF ERMGLVCRHM FLVFRDAQLE  600
QLPSQYIVTR WCKHLACGAC SGQLSVANGS TCGATQLWAE INTCVGLVGS NTERQARFID  660
VLKSLTVEFT SDGNTGGPIK GNRGAIQALC GVQAPQSITI KAPAQAKNKG TGKRIKSSRE  720
LAIEKNVKTG RKCGICGKYA HHNARSCPHK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	142	RRRRISNRVNCKAKICLRKKR
2	123	143	RRRRISNRVNCKAKICLRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-87	FAR1 family protein