PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170372.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 698aa MW: 75647.9 Da PI: 7.4858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170372.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.3e-16	384	430	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq XP_019170372.1 384 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 430 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MPLSEFLKML KNESGERKPT SSSADDLSPL PGSDFSELVW ENGQITMQGQ SSKAKKSDNL 60 SRMREKCVGN ASSSRIGKLD LAGSVLDEMP PSVPSGEMDL SQDDEIAPWL NYSPSNGQSQ 120 EYGSQLLPEI SGTTANEPSP HDGFPLIGAS KSVVNSGQRN ATKLDCSPRF GLLASWSSQQ 180 ANPLVSGVSD IGSSNGSINL DSILKDSVPP QAKNQDTETT RTCPPTLLNF SNFSRPVVLA 240 RANLQNTLEA KGKREKEIKE NAQNPAKTAL IEACSTSRKE SDLKSQPNLR TKFEQTDASR 300 EDTNDADKVH GNKAVEPGAC SSVCSGSSAE RASNDQSHSL KRRARENEES GCPSEDADEE 360 SAGAKKAAPA RGGTGQKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC NKADKASMLD 420 EAIEYLKTLQ LQVQVSRITV HYPNLMQIMS MGAGLCMPQM MFPAGMHHHM HAQMPHFPQM 480 GLGIGMGMGF GMGLPELNGA RSPGCPIFPM PAMPRPHFHS PSISGPINFP GMATATSNIQ 540 AFGHPCQGVP MSVPRTPFVP LSQQPSASSA PGLNASKMRM DGESEDPVKI KNLQMTQNSD 600 PIPSRLKNQT SQVQTTSDQQ PNASDNPTVN PTNSTNVPGS KQQVCNVTRD AERKEQKRAE 660 APRIVNSIQY IRRHLIEDGL CCAQRNEIAF IRKGDIAE

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MPLSEFLKML KNESGERKPT SSSADDLSPL PGSDFSELVW ENGQITMQGQ SSKAKKSDNL  60
SRMREKCVGN ASSSRIGKLD LAGSVLDEMP PSVPSGEMDL SQDDEIAPWL NYSPSNGQSQ  120
EYGSQLLPEI SGTTANEPSP HDGFPLIGAS KSVVNSGQRN ATKLDCSPRF GLLASWSSQQ  180
ANPLVSGVSD IGSSNGSINL DSILKDSVPP QAKNQDTETT RTCPPTLLNF SNFSRPVVLA  240
RANLQNTLEA KGKREKEIKE NAQNPAKTAL IEACSTSRKE SDLKSQPNLR TKFEQTDASR  300
EDTNDADKVH GNKAVEPGAC SSVCSGSSAE RASNDQSHSL KRRARENEES GCPSEDADEE  360
SAGAKKAAPA RGGTGQKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC NKADKASMLD  420
EAIEYLKTLQ LQVQVSRITV HYPNLMQIMS MGAGLCMPQM MFPAGMHHHM HAQMPHFPQM  480
GLGIGMGMGF GMGLPELNGA RSPGCPIFPM PAMPRPHFHS PSISGPINFP GMATATSNIQ  540
AFGHPCQGVP MSVPRTPFVP LSQQPSASSA PGLNASKMRM DGESEDPVKI KNLQMTQNSD  600
PIPSRLKNQT SQVQTTSDQQ PNASDNPTVN PTNSTNVPGS KQQVCNVTRD AERKEQKRAE  660
APRIVNSIQY IRRHLIEDGL CCAQRNEIAF IRKGDIAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	389	394	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-53	bHLH family protein