PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170411.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 151aa    MW: 16820.9 Da    PI: 4.8206
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-19955147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    krie+k +r++tf+kRr+g++KKA+EL+  C+ae+avi fs  g+ +
  XP_019170411.1  9 KRIEDKAKRHTTFTKRRQGLFKKASELCKRCNAEAAVITFSLAGNAF 55
                    79***************************************988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KASELCKRCN AEAAVITFSL AGNAFAFGHP  60
SVNAVLARHN SYDANGQPCN DRGSVDDDDA ESDAQKVPED GGVVVVASNE DLNDEDDDMK  120
VEEMSMEELE KLDSAMEEMK RKVIAQMKLL V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-24M-type_MADS family protein