PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170462.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27437.4 Da    PI: 10.1461
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.52e-141150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s+r+ ++ kR+ g+ KK +EL vLC+a++a+i++ss
  XP_019170462.1 11 IVNQSKRKASYQKRKRGLVKKLNELTVLCNADAAMIMYSS 50
                    78************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MTRRRLRLAY IVNQSKRKAS YQKRKRGLVK KLNELTVLCN ADAAMIMYSS FEQGPVIWPT  60
IERVQELIAR FMQLPDVQQT RRMMSQDSFV AQRLEKLGTQ LLKLKQQNRE KEMNAVMHQI  120
FRGEQIVDYL SSVDLNDLGW VLNTNIVESE MRFERDSPTL APFLPAAPSL ATASPPVLGS  180
GISHVVAPTD VFSGQSYQGT VGIQTSMFAN LNPGTAWSYQ NWAFINDSNQ NNPTQGRPGP  240
STQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11732RKASYQKRKRGLVKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-29M-type_MADS family protein