PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170501.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 263aa    MW: 28050.1 Da    PI: 6.5362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10147194455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L+ l+P +    +k   Ka++L + ++Y++sLq
  XP_019170501.1 147 SHSLAERARREKISERMKILQNLVPGC----NKVIGKASVLDEIINYVQSLQ 194
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MLNDGGAYPG SSNAQFNMAE IWPFPISTGG ATSPYALAPA EEDVNAMSDP MVIDRRVSQS  60
GGDGGGRKRK EEDESAKGGA GASTSGNGLQ SEDDSKRLKT GGQNKIPRSK ADGEGASGKQ  120
AEQAAKAAEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQNLV PGCNKVIGKA  180
SVLDEIINYV QSLQHQVEFL SMKLEAVNSR IPPGIEGLPS KDFPPQIFDT SGLAFGSQAT  240
REYGSSTSPD WLHMQTGGGF ERT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-75bHLH family protein