PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170538.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 204aa MW: 23245.8 Da PI: 10.9136

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170538.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.3	1.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT++Ed++lv +v+q+G g+W++ +++ g++R++k+c++rw +yl XP_019170538.1 14 KRPWTPDEDQKLVAYVQQYGHGSWHALPSKAGLKRCGKSCRLRWTNYL 61 579*******************************************97 PP
2	Myb_DNA-binding	47.6	3.7e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ Rt++ +k++w+++l XP_019170538.1 67 RGKFSRQEEQTIIQLHALLGNR-WSAIAAHLP-MRTDNGIKNYWNSHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MGSSPCFENV GLKKRPWTPD EDQKLVAYVQ QYGHGSWHAL PSKAGLKRCG KSCRLRWTNY 60 LRPDIKRGKF SRQEEQTIIQ LHALLGNRWS AIAAHLPMRT DNGIKNYWNS HLKKRLSKMG 120 IDPTTHKPKS NPFGFKEAAN LRHMAQWETA RLEAEARLVR RHSTMFGSSL HKPPSKPPPP 180 PTVPPTLDVL KAWQAAWTEP PMTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	2e-81	MYB family protein