PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170540.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 333aa MW: 36775 Da PI: 8.8404

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170540.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv +++q+G g+W++ +++ g++R++k+c++rw +yl XP_019170540.1 14 KGPWTADEDQKLVAYIQQYGHGSWHALPSKAGLKRCGKSCRLRWMNYL 61 79********************************************97 PP
2	Myb_DNA-binding	46.7	7.4e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ Rt++ +k++w+++l XP_019170540.1 67 RGKFSLQEEQTIIQLHALLGNR-WAAIAEHLP-MRTDNGIKNYWNSHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MGRSPCFEKV GLKKGPWTAD EDQKLVAYIQ QYGHGSWHAL PSKAGLKRCG KSCRLRWMNY 60 LRPGIKRGKF SLQEEQTIIQ LHALLGNRWA AIAEHLPMRT DNGIKNYWNS HLNKRLSKMG 120 IDPTTHKPNS NPFGFKEAAN LRHMAQWETA RLEAEARLVR RHSTMFASSL HKPPSNPPPP 180 PPTVPPTLDV LKVWQAAWTK PQMTARNPRV SLSPINVDDE GYMFVSAAAL VQSPTTLNFS 240 DQNLAAFPAV GFGDDMLLCY LEGSTCNMNT LGNPNTTGND IIGPAMDPLS EFPTFILPEN 300 LGDHCSSGYL YNVVGNCSAP DSILNLVASP VGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	4e-80	MYB family protein