PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170552.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 221aa    MW: 24281.2 Da    PI: 6.505
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.34e-2167153291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      Yn YA++vGFsvrk +++++  +++i +++f C k g++e+ ++    +  ++   r gC a ++     dg w vt+ ++eHnHel++
  XP_019170552.1  67 LYNGYAYRVGFSVRKGQQHYKASTKSIQMKRFFCAKAGYKEKPNSG--VKVYSKIDIRAGCGALVQFDGG-DGMWTVTEHVKEHNHELCS 153
                     7***************************************999887..89999**************999.*****************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MEETADRGED LTGDGLTTIP VNEDFVGDSL STDQADVNID IDGSSLSPVD EDLVGVVVSN  60
SDEACELYNG YAYRVGFSVR KGQQHYKAST KSIQMKRFFC AKAGYKEKPN SGVKVYSKID  120
IRAGCGALVQ FDGGDGMWTV TEHVKEHNHE LCSFGKSHLL RSHRRVLGNN HLEYLKDMKK  180
SGVLANGMRF LKHQSGGSPL VGFTNRDAYN SMACESLKCL N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-15FAR1 family protein