PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170613.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 222aa MW: 24280 Da PI: 9.657

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170613.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H XP_019170613.1 86 FECQYCFKEFANSQALGGHQNAH 108 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MAKDVSTSLS SSPCNNNGDL AVDESMPAAK KLKLFGFDLK TKTDYVSSKE DHESVNSSSS 60 STVVSSASRE KPAAARGGAG AGEKKFECQY CFKEFANSQA LGGHQNAHKK ERMRKKRLQI 120 QARKASLSCY YLQQHPFLHN PSSSSSSWLF DPSSANHFTP FEGSQISFGS QEPFLPDSSA 180 MFFTLTSNNT NPTSRKISKN HSNKTCKSLD LQLGLSLLHS TH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	6e-15	C2H2 family protein