PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170625.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 333aa MW: 37023.2 Da PI: 8.2866

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.5	7.6e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++q+G g+W++ +++ g++R++k+c++rw +yl XP_019170625.1 14 KGPWTPEEDQKLVAYIQQYGHGSWRSLPSKAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.7	4e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ Rt++++k++w+++l XP_019170625.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAHLP-MRTDNEIKNYWNSHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MGRSPCFEKV GLKKGPWTPE EDQKLVAYIQ QYGHGSWRSL PSKAGLKRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAHLPMRT DNEIKNYWNS HLKKRLSKMG 120 IDPTTHKPKS NPFGFKEAAN LRHMAQWETA RLEAEARPVR RHSTMFGSSL HKPPSNPPPP 180 PTVPPTLDVL KAWQAVWTEP PMTARNPRVS LSPINVDDED YMFVSAAALD QFPTTLNFSD 240 QNLAAFSAVG FGDDMLLCYL EGNTCNMNTL GNPNTTGDDI MGPAMDPLSE FPTFILPENL 300 SAHCSTGYLD SVVGNCGATD SIFNLVVSPV GIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	9e-94	MYB family protein