PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170626.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 431aa MW: 47054.8 Da PI: 7.1617

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	88	133	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ XP_019170626.1 88 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 133 899***************************.*********996 PP
2	Myb_DNA-binding	54.7	2.3e-17	140	183	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ XP_019170626.1 140 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 183 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MEDHHHHHHH NHQNQNNNSD VEEGGKGSDC SDGFGENSEP IIDLNAAVLS GEDHHHHHHQ 60 AIMHVGGNGG SSNGKEAEST GQSKLCARGH WRPAEDAKLK ELVAIYGPQN WNLIAEKLEG 120 RSGKSCRLRW FNQLDPRINR RAFSEEEEER LMAAHRLYGN KWAMIARLFP GRTDNAVKNH 180 WHVIMARKYR EQSSAYRRRK MGQLVYRRMN EEDEDQLTST NTDGAARDHG GNSGGGGGGM 240 RTTAIGAISS TSQSGCPFGG VGSNNNGGWM VYGGANGSPH MAASGEAIPT NNGHHHHHPP 300 PPPFSALCAP QQPPFDPFPG QCNNQMVGML NQGRCWGKPH HQFLGRHPPP PPPLMMTPIM 360 QQQQQYYNLP YSISPEFSSR PPPPPSEPHP PPPAAAEDDR KGGGGGSNNN STTPCDAISP 420 TFIDFLGVGA T

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MEDHHHHHHH NHQNQNNNSD VEEGGKGSDC SDGFGENSEP IIDLNAAVLS GEDHHHHHHQ  60
AIMHVGGNGG SSNGKEAEST GQSKLCARGH WRPAEDAKLK ELVAIYGPQN WNLIAEKLEG  120
RSGKSCRLRW FNQLDPRINR RAFSEEEEER LMAAHRLYGN KWAMIARLFP GRTDNAVKNH  180
WHVIMARKYR EQSSAYRRRK MGQLVYRRMN EEDEDQLTST NTDGAARDHG GNSGGGGGGM  240
RTTAIGAISS TSQSGCPFGG VGSNNNGGWM VYGGANGSPH MAASGEAIPT NNGHHHHHPP  300
PPPFSALCAP QQPPFDPFPG QCNNQMVGML NQGRCWGKPH HQFLGRHPPP PPPLMMTPIM  360
QQQQQYYNLP YSISPEFSSR PPPPPSEPHP PPPAAAEDDR KGGGGGSNNN STTPCDAISP  420
TFIDFLGVGA T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	5e-76	MYB family protein