PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170636.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 336aa MW: 37830.6 Da PI: 8.0121

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl XP_019170636.1 14 KGPWTPDEDSQLLAYIEQYGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l XP_019170636.1 67 RGNFSLQEEQSIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MGRSPCCEKE GLKKGPWTPD EDSQLLAYIE QYGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGNF SLQEEQSIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HLKKKLSKMG 120 IDPMTHRPKM NSSFGSAANL SHMAQWETAR LEAEARLVRH SKFISSSLIS PHHFRLHKPS 180 PPPPPKVPPS LDELKAWQET WTKPPRTRVS LSHVHDGAFL SNATPHQSPT TLNFSDQNLN 240 FPDQNLNFSD HESSWNIGNP NTTGDDIIPH VAMDPLSELP TFIHGFTELS PETLTGYLDH 300 DNIVGNCGTA DVEDISRYWN SILNNLMASP VGSPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	8e-96	MYB family protein