PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170720.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 479aa MW: 53373.2 Da PI: 6.2495

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.6	7.1e-14	27	71	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + ++ +G+++W+ Ia+++ +t qc+ rw++yl XP_019170720.1 27 SWSQEEDDILREQIRVHGTDNWTIIASKFK-DKTTRQCRRRWFTYL 71 6**************************9.***********97 PP
2	Myb_DNA-binding	43.6	6.7e-14	77	120	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg W++eEd ll +a + +G++ W+ Ia+ + gRt++ +k+r+ + XP_019170720.1 77 RGGWSPEEDMLLCEAQRIFGNR-WTEIAKVVS-GRTDNAVKNRFTT 120 789*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MHQNMKKKSS STNSSESTKP KERHIVSWSQ EEDDILREQI RVHGTDNWTI IASKFKDKTT 60 RQCRRRWFTY LNSDFKRGGW SPEEDMLLCE AQRIFGNRWT EIAKVVSGRT DNAVKNRFTT 120 LCKKRAKNEA LAKENSNSSV NRRVVFPSWL NSSDSISESA VPLKKQRRSH IPDPPESFSN 180 GEKSLVSCDA TNQMLRSPFA VIGQNLYSPG SNVSSHQNDE DTKDSHANGS SNETEGTFLK 240 KDDPKILALM QQAELLSSLA LKVNSENTNQ SLENACKVLE DFLNHTKDGD VTKCQISEME 300 IQLENFKQSA NELKSINECS QPSWRQPALS EESAGSSEYS TGSTLLAHGV GDNREKSEAE 360 LCALHQDIES GLQSTHIDDE FAKGISGNAS NSQVDTFPAC DKVNPVNETI CDYSNEECCS 420 PIQVTPMFRS LAAAIPSPKF SESERQFLLK TLGMESTSPN PSINPSHPPS CKRALLHSL

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MHQNMKKKSS STNSSESTKP KERHIVSWSQ EEDDILREQI RVHGTDNWTI IASKFKDKTT  60
RQCRRRWFTY LNSDFKRGGW SPEEDMLLCE AQRIFGNRWT EIAKVVSGRT DNAVKNRFTT  120
LCKKRAKNEA LAKENSNSSV NRRVVFPSWL NSSDSISESA VPLKKQRRSH IPDPPESFSN  180
GEKSLVSCDA TNQMLRSPFA VIGQNLYSPG SNVSSHQNDE DTKDSHANGS SNETEGTFLK  240
KDDPKILALM QQAELLSSLA LKVNSENTNQ SLENACKVLE DFLNHTKDGD VTKCQISEME  300
IQLENFKQSA NELKSINECS QPSWRQPALS EESAGSSEYS TGSTLLAHGV GDNREKSEAE  360
LCALHQDIES GLQSTHIDDE FAKGISGNAS NSQVDTFPAC DKVNPVNETI CDYSNEECCS  420
PIQVTPMFRS LAAAIPSPKF SESERQFLLK TLGMESTSPN PSINPSHPPS CKRALLHSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02820.2	1e-150	MYB family protein