PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170880.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26038.8 Da    PI: 8.8995
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170880.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF725e-231663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie k   qvtfskRr g++KKA+EL++LC++eva+i+fs+ gk++ +
  XP_019170880.1 16 KIEIKNHLQVTFSKRRSGLFKKASELCILCGVEVAIIVFSPAGKVFSF 63
                    67888889*************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MAKRPSMGRQ KIKIEKIEIK NHLQVTFSKR RSGLFKKASE LCILCGVEVA IIVFSPAGKV  60
FSFGHPNVDP IIDRFLSRNH HHPAAATSNA NANATLHLVE AHRSAAVREM NLQLTQMTAE  120
SEIERKRGEA LDLMRKESRS RCWWEAPVSE LRLPELEQLR DAMDELKKNV AAQAESIMAE  180
AVNTSTFLAM NGTAAAAGIF DPPETKPPQR IMANNTHNHH HALHDFGYDL AFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-46M-type_MADS family protein