PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170883.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 327aa    MW: 36772.5 Da    PI: 4.5556
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.71e-1877130356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++++eq++ Le+ Fe ++++  e++++LAk lgL+ rqV vWFqNrRa+ k
  XP_019170883.1  77 KKRRLSPEQVHFLEQSFEVENKLEPERKAQLAKDLGLQPRQVAVWFQNRRARFK 130
                     56689***********************************************98 PP
2HD-ZIP_I/II132.31.8e-4276167192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrls eqv++LE+sFe e+kLeperK++la++LglqprqvavWFqnrRAR+ktk++Ek+y++Lk++yd+lk++ ++L+ke+e+Lr+e++
  XP_019170883.1  76 EKKRRLSPEQVHFLEQSFEVENKLEPERKAQLAKDLGLQPRQVAVWFQNRRARFKTKHIEKEYDSLKSCYDQLKADCDSLSKENEQLRNEVQ 167
                     69**************************************************************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MEGTGKMSSC VDNRVLLQND RFPSPSEVLD SFWLPTSNPS FQASASSMVN FNGGGGEMER  60
GGGNEDYGGG GFYQAEKKRR LSPEQVHFLE QSFEVENKLE PERKAQLAKD LGLQPRQVAV  120
WFQNRRARFK TKHIEKEYDS LKSCYDQLKA DCDSLSKENE QLRNEVQLLT EKLMRKEKGS  180
GGFPQPAKPE SSLDPTTNRN LGKPQEQLIL HTTNSSQDNN VCKQEDAISS AKSDVFDSDS  240
PRYTDGIHSS SLFLQQEPAD SSNVLDSDFS QDDDDSLNRG LIHSPCVFPK LEEEEDKDHC  300
LQMLPPYSCG LGFSVEDQTA PSWFWSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-45HD-ZIP family protein