PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019170922.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 608aa    MW: 67041 Da    PI: 6.2075
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019170922.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like902.1e-28196249155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+gL++e+v+SHLQkYRl
  XP_019170922.1 196 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILELMNVEGLSRENVASHLQKYRL 249
                     79*******************.********************************8 PP
2Myb_DNA-binding37.26.7e-12198248148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v av+qlG +   +k+I + m+ +g++++++ s++qky+
   XP_019170922.1 198 RVVWSIELHRKFVAAVNQLGIEkaVPKRILELMNvEGLSRENVASHLQKYR 248
                      678***********************************************7 PP
3Response_reg79.89.5e-27261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll+ +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++ +++ + +  G
  XP_019170922.1  26 VLAVDDDPICLKLLEGLLRKCQY-HVTTTSQARMALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTKLVMKGVTHG 118
                     799********************.***************888889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+ +eel++
  XP_019170922.1 119 ACDYLVKPVRIEELRN 134
                     **************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    
MTVEETRRNM GVDRENYHNF PVGMRVLAVD DDPICLKLLE GLLRKCQYHV TTTSQARMAL  60
KMLRENKDRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDTKL VMKGVTHGAC  120
DYLVKPVRIE ELRNIWQHVI RKSKGQNKFD DQDNGYRGGQ GFPLTGSGEQ NALLNKKRKD  180
EEDETNENED PSTQKKPRVV WSIELHRKFV AAVNQLGIEK AVPKRILELM NVEGLSRENV  240
ASHLQKYRLY LKRISSVATQ QANMVAALRG KDSAFMRMAS LDGLGDFQSL GGPGRFNHTT  300
LSTYTPADML GRLSSATGIS IRNLSAHNHA QNLENSLGSD GNLNPNISLS SHNAASLFQG  360
IPSPLAVQEL NPLENSRALT AFSDSGSVIG SSTNPIMLQG SPKQELIGGG FGNQHSLNMA  420
SLSSELYNTG VNSSSNFLGH GRCSENWQAS IQVSEFQSGS YPLTETFSHS QLPQNCEREH  480
DLHSSPVACT TFEDSREAQV PRQQNQNSND IFRNLSSHVP GNGMTPSLSQ GSLVLFHQNG  540
NEMATPNPRT RSNEDNLLES TKTHGAFVSQ GFDALDDLMN AVIKQEEDNR GTLDGEFGFG  600
AYPFGSCI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-123ARR-B family protein