PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171013.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 466aa MW: 49835.7 Da PI: 7.4366

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.5	1.4e-39	85	232	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg 88 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i +l+++ + e++ss+a+ ++++ XP_019171013.1 85 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSIADLPSLnppftelsD---------ERRSSAAGLQEQE 170 689***********************************************************555544431.........2222222211111 PP TCP 89 ................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 k++ s+ +++++k + l+l++ e r kar+rarert+ek + k+++ XP_019171013.1 171 qadiemegdqnmmllsKSC-SS--TSETSKGSGGGLSLSRsEGRIKARERARERTAEKEKEKENN 232 2334445566777763333.33..34444444455999999****************999765 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MEMEEIEAHQ GCSKFQRIGN GNGRMVSSGK IAHNGDEDED DGELKRSNGG GRGGLNIGSG 60 HGGVGVGSLC GWPSSGRIVR VSRASGGKDR HSKVLTSKGL RDRRVRLSVN TAIQFYDLQD 120 RLGYDQPSKA VEWLLKAAAP SIADLPSLNP PFTELSDERR SSAAGLQEQE QADIEMEGDQ 180 NMMLLSKSCS STSETSKGSG GGLSLSRSEG RIKARERARE RTAEKEKEKE NNETSGHHNH 240 GVSAHPHHHN LNPISSSSFT ELLTGTTSPA AAQTRGGGDT NFFAKSPTPM DYFTSGLLCQ 300 TSTRPMDHHH SSSSAFPGNI IHMTNPLASV SSPLFNMGGG ELPIQPFSFV SDHLAPAGNN 360 GNGQQNNNEY NLSFSISPSS SSSGLPAGLN RGTLQSNSSS PSLLPHFQRF PPLDGSSPGF 420 FTLSTADNHH HHFLPRFDAR LQLYYGDTHT AAAARPSSDH KGKGKN

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MEMEEIEAHQ GCSKFQRIGN GNGRMVSSGK IAHNGDEDED DGELKRSNGG GRGGLNIGSG  60
HGGVGVGSLC GWPSSGRIVR VSRASGGKDR HSKVLTSKGL RDRRVRLSVN TAIQFYDLQD  120
RLGYDQPSKA VEWLLKAAAP SIADLPSLNP PFTELSDERR SSAAGLQEQE QADIEMEGDQ  180
NMMLLSKSCS STSETSKGSG GGLSLSRSEG RIKARERARE RTAEKEKEKE NNETSGHHNH  240
GVSAHPHHHN LNPISSSSFT ELLTGTTSPA AAQTRGGGDT NFFAKSPTPM DYFTSGLLCQ  300
TSTRPMDHHH SSSSAFPGNI IHMTNPLASV SSPLFNMGGG ELPIQPFSFV SDHLAPAGNN  360
GNGQQNNNEY NLSFSISPSS SSSGLPAGLN RGTLQSNSSS PSLLPHFQRF PPLDGSSPGF  420
FTLSTADNHH HHFLPRFDAR LQLYYGDTHT AAAARPSSDH KGKGKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	3e-38	TCP family protein