PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019171041.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 322aa    MW: 35938.6 Da    PI: 4.8151
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019171041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.4e-35121032102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+y++++d+++++li+w   +nsf+v+++ ef++k+Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll++
  XP_019171041.1  12 FVMKTYQMVNDPRIDSLITWGLANNSFIVVEPLEFSDKILPAFFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTHLLKN 97 
                     9********************888*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k+
  XP_019171041.1  98 IVRRKN 103
                     ****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MEAEGNNTIA PFVMKTYQMV NDPRIDSLIT WGLANNSFIV VEPLEFSDKI LPAFFKHNNF  60
SSFVRQLNTY GFRKVDPDKW EFANEWFLRG QTHLLKNIVR RKNGKNLLLH CKHGGGDEGD  120
EEEEEMFSEI MRMKKEQKDL EEELERMNRR LEATERRPEQ MMEFLCKVVE EPEILPRMML  180
VGRERVARRI SLDSAAAAAG EKKMKLAAVA SCPVKNEEED GGGVALGINS SFHLHDAEFD  240
VDTLCQSSPE NPLMAGWLSR SNNNCCTVST TSSSSLSSSD SGGFTVATPL DVFSGYDSMG  300
KGNGTSAATA PPYPFSLLEG SI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-65HSF family protein