PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171079.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 281aa MW: 31106.3 Da PI: 5.6119

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	105.9	6.6e-33	76	178	1	105
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 a+g+kdrhsk++T++g RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak++i +l+ +s +++e e+ ++ ++++++ + + + XP_019171079.1 76 ATGRKDRHSKVCTARGTRDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLMKEAKAEIEALNAATSMKEEEE--ERIILQNCSNNNPSFSVFPM 168 589************************************************************9955444211..22222222223333334444 PP TCP 96 kskksqksaa 105 ++ s+ +++ XP_019171079.1 169 GNNVSDLDPN 178 4444444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MDPVLHHLCE GEDDSEEDEE SYGGGVQQCR RRRKGAIMED GFEQETQRVK GKKRGKGGEV 60 MVVNGGGGGG GRIVRATGRK DRHSKVCTAR GTRDRRVRLS PNTAIQFYDV QDRLGYDRPS 120 KAIDWLMKEA KAEIEALNAA TSMKEEEEER IILQNCSNNN PSFSVFPMGN NVSDLDPNCL 180 SSFPDASSSS SSIFFFDDQR LISWNLGPEE GSFNPPVIAQ NQVFSQREPL QSSFFPHTFS 240 YAAAMGGFAN NNELSGLSST AEDHHQHLSS GKPTSLLDYH H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	57	GKKRGKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	4e-27	TCP family protein