PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171154.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 611aa MW: 67588.7 Da PI: 4.874

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.3e-14	417	459	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ErrRR++iN++f L +l+P++ +K +K++iL +++eY+k+L XP_019171154.1 417 VSERRRREKINERFMILSSLIPSS-----GKADKVSILDETIEYLKDL 459 57*******************9.....9**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MGPPSLIPPT TIYMFSNLDG TTEWVLEWGD GYYNGDIKTR KTVQAAETST DQLGLQRTEH 60 LRELYGSLLA GETNLHAKIP SAALSPEDLT DTEWYFLVCM SFVFNIGQGL PGKALAKNQT 120 VWLCNAPQAD GRVFTRTLLA KSACIQTVVC FPHLGGVIEL GVTELVKEDR GLVQHLKTSY 180 LDIPCPIVPG VPNYISTDDG NDRDIVNSKP NQDTLEASPK EENIDSPDNS SNGLEADEFK 240 VKGATAEASQ PPNCQIVEDD ISNCIHNSTN SSDCISQNYE NPEEKVSDFL NDEEMVEHSP 300 PENQECNQES LVPLDNRGQG HDVHYQSILS SVLKSSHQFI LGPYFRNGNR ESSFGGWKKE 360 ISTNIQTLRI ETSQRLLKKV LSGVARMVCI PDTRKEGDGK NDPRRLEADE SDRSRVVSER 420 RRREKINERF MILSSLIPSS GKADKVSILD ETIEYLKDLK TRVWEAESQK EGFELNARMG 480 RNCKDCDDAE RTSDNCGTNI IDNNKKPSSK KRKASETEGA SKSIAKNGSA RDVAVSVTDE 540 DVTIEIGCQW SEGVLIKIIQ ALNNLHLDCE TIQSSNGDDG TLSVSVKCKM KASKLTSPSP 600 ALIRQALKRV I

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MGPPSLIPPT TIYMFSNLDG TTEWVLEWGD GYYNGDIKTR KTVQAAETST DQLGLQRTEH  60
LRELYGSLLA GETNLHAKIP SAALSPEDLT DTEWYFLVCM SFVFNIGQGL PGKALAKNQT  120
VWLCNAPQAD GRVFTRTLLA KSACIQTVVC FPHLGGVIEL GVTELVKEDR GLVQHLKTSY  180
LDIPCPIVPG VPNYISTDDG NDRDIVNSKP NQDTLEASPK EENIDSPDNS SNGLEADEFK  240
VKGATAEASQ PPNCQIVEDD ISNCIHNSTN SSDCISQNYE NPEEKVSDFL NDEEMVEHSP  300
PENQECNQES LVPLDNRGQG HDVHYQSILS SVLKSSHQFI LGPYFRNGNR ESSFGGWKKE  360
ISTNIQTLRI ETSQRLLKKV LSGVARMVCI PDTRKEGDGK NDPRRLEADE SDRSRVVSER  420
RRREKINERF MILSSLIPSS GKADKVSILD ETIEYLKDLK TRVWEAESQK EGFELNARMG  480
RNCKDCDDAE RTSDNCGTNI IDNNKKPSSK KRKASETEGA SKSIAKNGSA RDVAVSVTDE  540
DVTIEIGCQW SEGVLIKIIQ ALNNLHLDCE TIQSSNGDDG TLSVSVKCKM KASKLTSPSP  600
ALIRQALKRV I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	424	ERRRRE
2	420	425	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-145	bHLH family protein