PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019171202.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26757.2 Da    PI: 8.3341
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019171202.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.34.8e-0929541540
                    HHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF 15 kRrngilKKAeELSvLCdaevaviif 40
                    + ++ +lK A+EL+vLCd+e+ + ++
  XP_019171202.1 29 RKKAALLKQAKELCVLCDVEIGIAMY 54
                    45789****************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MRVGGGIKVG RHLRLMMMSE RERKRVIERK KAALLKQAKE LCVLCDVEIG IAMYEGDCLI  60
DVWPCVEEAR KRFLGFWGLP EAERVKKMVT HEKFVRDWVN GEIEKMRKKE DEVERKEMNV  120
VMKKVIQGES RFEEIQDARQ LMGLYALADE KMQELEKRKQ HLLQLRNHGG AAGVPPLATA  180
ADSASWFVPA MAPLPPATAS WFVPAMAPLP VNGGGGGEGT HRDMIFSDVD FNQVWP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.13e-12M-type_MADS family protein