PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171216.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 357aa MW: 40748.2 Da PI: 7.4095

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171216.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.1e-22	57	151	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY YAk++GF+vr+s+ kk+ + g + k++ vCs++g++e++ k+ ++++r+r+++r+gC a++++k dg+++v+k+e+ H+H l XP_019171216.1 57 KFYTMYAKTIGFDVRRSSDKKN-DFGIVLKKDVVCSRQGFKEDRGKEtlgeggGSQKKRRRTTNRVGCGARIVMKIVPDGRYKVHKFEERHTHCL 150 6**************99998.8888*********************9999999********************************99 PP FAR1 90 a 90 + XP_019171216.1 151 C 151 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MYGTGVCSPD EVNANESEKD FRMDISPGGT KYWYTECDCS LKPYEGQMFN TLEDGIKFYT 60 MYAKTIGFDV RRSSDKKNDF GIVLKKDVVC SRQGFKEDRG KETLGEGGGS QKKRRRTTNR 120 VGCGARIVMK IVPDGRYKVH KFEERHTHCL CEESQKPLMK VNCKIEIAHQ EFITKCEKAN 180 VGASKSFDIY AEIVEGPENV GATQHDFKNY RRELLAYMKW GDVQMVISNY LEQKTDCADM 240 YFEFEVNAND QLSRVFWADG MARKNYGAFG DVVSFDATYK TNRCHLVFVP FTGVDNHKQC 300 VTFAAALIDK EDVESYSWVL NHFKNAMGTA PPIVITDQDP AMKIAIADVF RGSRHRY

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MYGTGVCSPD EVNANESEKD FRMDISPGGT KYWYTECDCS LKPYEGQMFN TLEDGIKFYT  60
MYAKTIGFDV RRSSDKKNDF GIVLKKDVVC SRQGFKEDRG KETLGEGGGS QKKRRRTTNR  120
VGCGARIVMK IVPDGRYKVH KFEERHTHCL CEESQKPLMK VNCKIEIAHQ EFITKCEKAN  180
VGASKSFDIY AEIVEGPENV GATQHDFKNY RRELLAYMKW GDVQMVISNY LEQKTDCADM  240
YFEFEVNAND QLSRVFWADG MARKNYGAFG DVVSFDATYK TNRCHLVFVP FTGVDNHKQC  300
VTFAAALIDK EDVESYSWVL NHFKNAMGTA PPIVITDQDP AMKIAIADVF RGSRHRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-50	FAR1 family protein