PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019171377.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 229aa    MW: 25313.8 Da    PI: 7.9362
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019171377.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY230.54.1e-71191906169
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa..eshldeslkee...lleelkveeenlksnvekeesasts 95 
                      s+q+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      +   ++hl+  + ++   +l+e  +++ n+ ++++++++a +s
  XP_019171377.1  19 PSDQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLILPSPPpnHHHLHSFFSPShnsILDEISNSNPNFLMMNVHHQAAAAS 113
                     79*****************************************9999886655410455666666557778999999999998888888888877 PP

           YABBY  96 vssekl..senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                      + + l       +e+pr+pp ++rPPekrqrvPsaynrfikeeiqrika+nPdi+hreafsaaaknWahfP+i fg
  XP_019171377.1 114 SAEFVLplRAAGFDELPRPPPlINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDITHREAFSAAAKNWAHFPHIQFG 190
                     77777644667789*****9999*****************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSFSSSSSSS LDHRSPLPPS DQLCYVHCNI CDTVLAVSVP CTSLFKTVTV RCGHCTNLLP  60
VNMRGLILPS PPPNHHHLHS FFSPSHNSIL DEISNSNPNF LMMNVHHQAA AASSAEFVLP  120
LRAAGFDELP RPPPLINRPP EKRQRVPSAY NRFIKEEIQR IKAGNPDITH REAFSAAAKN  180
WAHFPHIQFG IMPDHQATVK KSNVRPQDGE DMLIKDGLFA SADVGISPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.14e-68YABBY family protein