PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171485.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 327aa MW: 36243.9 Da PI: 5.6743

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	255	289	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_019171485.1 255 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 289 569*****************************885 PP
2	ELK	41.3	3.2e-14	209	230	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_019171485.1 209 ELKGQLLRKYSGYLGSLKQEFM 230 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MEGGGGSIAS LCPMMMMMMP PSSNDQDNNN SNQNNNPGSG EASAGYFMDN NNNGGGGGGG 60 GGEEGKCSSS SSSVKAKIMA HPHYHRLLAA YLNCQKIGAP PEVVARLEEA CASMAAMGRT 120 GGSCLGEDPA LDQFMEAYCE MLTKYEQELS KPFKEAMLFL SRIESQFKAL TLPCSSESAG 180 ADAMDRNVSS EEEVDVTTGF IDPQVEDREL KGQLLRKYSG YLGSLKQEFM KKRKKGKLPK 240 EARQQLLDWW TRHYKWPYPS ESQKLALAES TGLDQKQINN WFINQRKRHW KPSEDMQFVV 300 MDTAHPHYYM DNVLGNPFSM DITPTLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	234	LKQEFMKKRK
2	231	235	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-136	TALE family protein