PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171561.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 1006aa MW: 113490 Da PI: 5.9026

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	178.9	6.2e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl++ ei++iL n++k+++t e+ +p sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v++l+cyYah+e+n++fqr XP_019171561.1 20 LEAQHRWLRPAEICEILRNYKKFHITPEPLYKPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDMLHCYYAHGEDNENFQR 114 5679***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Le +l +iv+vhylevk XP_019171561.1 115 RSYWMLEPDLMHIVFVHYLEVK 136 *****************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1006 aa Download sequence
MAESGSDPLG FRLDIKQILL EAQHRWLRPA EICEILRNYK KFHITPEPLY KPVSGSVFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEDNE NFQRRSYWML 120 EPDLMHIVFV HYLEVKGNKA MRSIEPTESS SIDESSMSVS SAGNCTKLTS TSADSPSPTS 180 TLTSAYEDVE SEYSHPGTSG LQSFPEIATA GSYSVENVDT VPLQYSGSQQ ILDLASWEKF 240 LENCTKGDIA YKQDPTNSSS VQTNWQHYSE DPALQFHGQT VHQGFISDSN YDLGRFSNQK 300 SLQEYFLNTT GPLDMYPNET AELPIEMNHQ YNPNFDSNVQ KVGNEEYSVK KHPLLDGSGL 360 KEGLNKVDSF SRWVDKELGD VEELQMHSSN GISWNVIESE DSDSCIPSQL QLGSDSLNPS 420 LSQEQLFSII EFSPIWAYSN KETKVLIKGK FLKTEKEVAK CKWSCMFGEV EVPIEVLPTG 480 LLCCYSPPHR AETVPFYITC SNRLACSEVR EFEYRAGPSK DTNAGDSHTM EGLLHERFER 540 LLHLGATVSH CSSEDIMEKQ TIVNKVIELM EEQNLCMTDF MDLYEPKNRE LPLFGKQLKE 600 RFYTWLLHKI NEDGKGPAFV DEEGQGLIHL AAALGYNWAF KPILISGVSI DFRDVNGWTP 660 LHWAAFYGRE ETVATLVSLG ASPGALTDPS AEFPLGRTPA DLASAYGNKG ISGFLAESSL 720 TTHLARLDVS DAKENNALDT SKTKEIQTVT ERVAVPTTDN VPDVSLKDSL AAVRNATQAA 780 ARIHQIFRVQ SFQRKKLIEH NGELLSDEQA LSMVASKTSR LGQNDRIAHT AATQIQKKFR 840 GWKKRKEFLL IRQRVVRIQA HVRGHQARKK YKPIIWSVGI LEKVILRWRR KGSGLRGFKS 900 DAVAKPIVME DTPASAEDDY DFLKEGRKQT EERMQKALSR VKSMAQYPEA REQYRRMLTA 960 TEGVSKTKDA STGVVGSSED TSYQDEDLLD IETLLDDDTF MSIAFE

Sequence ? help Back to Top

Protein Sequence Length: 1006 aa Download sequence

MAESGSDPLG FRLDIKQILL EAQHRWLRPA EICEILRNYK KFHITPEPLY KPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEDNE NFQRRSYWML  120
EPDLMHIVFV HYLEVKGNKA MRSIEPTESS SIDESSMSVS SAGNCTKLTS TSADSPSPTS  180
TLTSAYEDVE SEYSHPGTSG LQSFPEIATA GSYSVENVDT VPLQYSGSQQ ILDLASWEKF  240
LENCTKGDIA YKQDPTNSSS VQTNWQHYSE DPALQFHGQT VHQGFISDSN YDLGRFSNQK  300
SLQEYFLNTT GPLDMYPNET AELPIEMNHQ YNPNFDSNVQ KVGNEEYSVK KHPLLDGSGL  360
KEGLNKVDSF SRWVDKELGD VEELQMHSSN GISWNVIESE DSDSCIPSQL QLGSDSLNPS  420
LSQEQLFSII EFSPIWAYSN KETKVLIKGK FLKTEKEVAK CKWSCMFGEV EVPIEVLPTG  480
LLCCYSPPHR AETVPFYITC SNRLACSEVR EFEYRAGPSK DTNAGDSHTM EGLLHERFER  540
LLHLGATVSH CSSEDIMEKQ TIVNKVIELM EEQNLCMTDF MDLYEPKNRE LPLFGKQLKE  600
RFYTWLLHKI NEDGKGPAFV DEEGQGLIHL AAALGYNWAF KPILISGVSI DFRDVNGWTP  660
LHWAAFYGRE ETVATLVSLG ASPGALTDPS AEFPLGRTPA DLASAYGNKG ISGFLAESSL  720
TTHLARLDVS DAKENNALDT SKTKEIQTVT ERVAVPTTDN VPDVSLKDSL AAVRNATQAA  780
ARIHQIFRVQ SFQRKKLIEH NGELLSDEQA LSMVASKTSR LGQNDRIAHT AATQIQKKFR  840
GWKKRKEFLL IRQRVVRIQA HVRGHQARKK YKPIIWSVGI LEKVILRWRR KGSGLRGFKS  900
DAVAKPIVME DTPASAEDDY DFLKEGRKQT EERMQKALSR VKSMAQYPEA REQYRRMLTA  960
TEGVSKTKDA STGVVGSSED TSYQDEDLLD IETLLDDDTF MSIAFE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	843	872	KKRKEFLLIRQRVVRIQAHVRGHQARKKYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	CAMTA family protein