PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171562.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 910aa MW: 102144 Da PI: 5.1534

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	47.9	2.5e-15	1	39	80	118
CG-1 80 vlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +l+cyYah+e+n++fqrr+yw+Le +l +iv+vhylevk XP_019171562.1 1 MLHCYYAHGEDNENFQRRSYWMLEPDLMHIVFVHYLEVK 39 69**********************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence
MLHCYYAHGE DNENFQRRSY WMLEPDLMHI VFVHYLEVKG NKAMRSIEPT ESSSIDESSM 60 SVSSAGNCTK LTSTSADSPS PTSTLTSAYE DVESEYSHPG TSGLQSFPEI ATAGSYSVEN 120 VDTVPLQYSA GSQQILDLAS WEKFLENCTK GDIAYKQDPT NSSSVQTNWQ HYSEDPALQF 180 HGQTVHQGFI SDSNYDLGRF SNQKSLQEYF LNTTGPLDMY PNETAELPIE MNHQYNPNFD 240 SNVQKVGNEE YSVKKHPLLD GSGLKEGLNK VDSFSRWVDK ELGDVEELQM HSSNGISWNV 300 IESEDSDSCI PSQLQLGSDS LNPSLSQEQL FSIIEFSPIW AYSNKETKVL IKGKFLKTEK 360 EVAKCKWSCM FGEVEVPIEV LPTGLLCCYS PPHRAETVPF YITCSNRLAC SEVREFEYRA 420 GPSKDTNAGD SHTMEGLLHE RFERLLHLGA TVSHCSSEDI MEKQTIVNKV IELMEEQNLC 480 MTDFMDLYEP KNRELPLFGK QLKERFYTWL LHKINEDGKG PAFVDEEGQG LIHLAAALGY 540 NWAFKPILIS GVSIDFRDVN GWTPLHWAAF YGREETVATL VSLGASPGAL TDPSAEFPLG 600 RTPADLASAY GNKGISGFLA ESSLTTHLAR LDVSDAKENN ALDTSKTKEI QTVTERVAVP 660 TTDNVPDVSL KDSLAAVRNA TQAAARIHQI FRVQSFQRKK LIEHNGELLS DEQALSMVAS 720 KTSRLGQNDR IAHTAATQIQ KKFRGWKKRK EFLLIRQRVV RIQAHVRGHQ ARKKYKPIIW 780 SVGILEKVIL RWRRKGSGLR GFKSDAVAKP IVMEDTPASA EDDYDFLKEG RKQTEERMQK 840 ALSRVKSMAQ YPEAREQYRR MLTATEGVSK TKDASTGVVG SSEDTSYQDE DLLDIETLLD 900 DDTFMSIAFE

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence

MLHCYYAHGE DNENFQRRSY WMLEPDLMHI VFVHYLEVKG NKAMRSIEPT ESSSIDESSM  60
SVSSAGNCTK LTSTSADSPS PTSTLTSAYE DVESEYSHPG TSGLQSFPEI ATAGSYSVEN  120
VDTVPLQYSA GSQQILDLAS WEKFLENCTK GDIAYKQDPT NSSSVQTNWQ HYSEDPALQF  180
HGQTVHQGFI SDSNYDLGRF SNQKSLQEYF LNTTGPLDMY PNETAELPIE MNHQYNPNFD  240
SNVQKVGNEE YSVKKHPLLD GSGLKEGLNK VDSFSRWVDK ELGDVEELQM HSSNGISWNV  300
IESEDSDSCI PSQLQLGSDS LNPSLSQEQL FSIIEFSPIW AYSNKETKVL IKGKFLKTEK  360
EVAKCKWSCM FGEVEVPIEV LPTGLLCCYS PPHRAETVPF YITCSNRLAC SEVREFEYRA  420
GPSKDTNAGD SHTMEGLLHE RFERLLHLGA TVSHCSSEDI MEKQTIVNKV IELMEEQNLC  480
MTDFMDLYEP KNRELPLFGK QLKERFYTWL LHKINEDGKG PAFVDEEGQG LIHLAAALGY  540
NWAFKPILIS GVSIDFRDVN GWTPLHWAAF YGREETVATL VSLGASPGAL TDPSAEFPLG  600
RTPADLASAY GNKGISGFLA ESSLTTHLAR LDVSDAKENN ALDTSKTKEI QTVTERVAVP  660
TTDNVPDVSL KDSLAAVRNA TQAAARIHQI FRVQSFQRKK LIEHNGELLS DEQALSMVAS  720
KTSRLGQNDR IAHTAATQIQ KKFRGWKKRK EFLLIRQRVV RIQAHVRGHQ ARKKYKPIIW  780
SVGILEKVIL RWRRKGSGLR GFKSDAVAKP IVMEDTPASA EDDYDFLKEG RKQTEERMQK  840
ALSRVKSMAQ YPEAREQYRR MLTATEGVSK TKDASTGVVG SSEDTSYQDE DLLDIETLLD  900
DDTFMSIAFE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	747	776	KKRKEFLLIRQRVVRIQAHVRGHQARKKYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.2	0.0	CAMTA family protein