PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019171865.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 211aa    MW: 24151.6 Da    PI: 10.0117
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019171865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84.2e-34321322103
                     HHHHHHHHHC........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
    HSF_DNA-bind   2 Flkklyeile........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                     Fl+k+y+ile        de+   ++sw+++g+ fvv+ ++ef++++Lp+yFkh+nf+SFvRQLn+YgFkkv+ ++         weF+h++F++
  XP_019171865.1  32 FLTKTYDILEeedekrrrDEKAAAVVSWNAHGDGFVVWSPTEFSDHMLPRYFKHNNFSSFVRQLNTYGFKKVTPKR---------WEFQHEKFQR 117
                     9*********77777776679****************************************************999.........********** PP

                     XXXXXXXXXXXXXXX CS
    HSF_DNA-bind  89 gkkellekikrkkse 103
                     g+++ll  i rkk e
  XP_019171865.1 118 GRRHLLVGIARKKAE 132
                     ************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MTAGSPAAAT GRKAAAAGKQ SSLPGTKCPA PFLTKTYDIL EEEDEKRRRD EKAAAVVSWN  60
AHGDGFVVWS PTEFSDHMLP RYFKHNNFSS FVRQLNTYGF KKVTPKRWEF QHEKFQRGRR  120
HLLVGIARKK AEPSAFPAYL RANYEEEEDT ITSSTTTTLL SSSRLLLMNL LEDNKKLRKE  180
RMELQMQIAH YKTLQMRLLE CLSSQCMGSQ Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-36HSF family protein