PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171909.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 687aa MW: 78796.1 Da PI: 9.6456

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171909.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.4	4.8e-18	11	111	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY +Y +vGF++r s+ + r+g+ t++ C++eg++++ +++ ++ +r+r+++rtgC+a+++ k + ++vt++ + XP_019171909.1 11 EFYTRYDAKVGFDTRSSSVVTA-RDGTKTQKLILCNREGFKNTGSQHcqsqssadagegPSRPKRRRVSNRTGCRARIMFKYIGAAGYQVTTFIE 104 6************9998887.88889***********9999999**999889999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019171909.1 105 KHNHNMS 111 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MIFKTLDAGI EFYTRYDAKV GFDTRSSSVV TARDGTKTQK LILCNREGFK NTGSQHCQSQ 60 SSADAGEGPS RPKRRRVSNR TGCRARIMFK YIGAAGYQVT TFIEKHNHNM SSVLARQFLK 120 GNRNISSVHQ KFILDCAKAN IGASKSHGLY SHIVGDYSEV GATVVDFKNV RRDLRAYILG 180 ADAQILVHNL IKKQEMCPAF AFDYEVDEDE QMSRLLWADP MSKKNFAAFG DVVSFDATYS 240 TNRYDLAMGM EPRIIVTDQD PAMKVAIPTV FKQARHRYCM WHIMCKVGEK VGPTLNKDEE 300 FRNKLNSIVW TSSLEPPDFE KQWRELMEKY NLVEHNWFKT MFEARKHWIP AYFRDVFMGG 360 LLRTTSRSES ENYTYSRFTG PQSSLVEFMM NFDSALRSQR NTNAKLNSDN EGYNPDMKTP 420 LGIEKHASIV YTITVFYQRK DGGMLHYDIM DGKNKRFTVV HNVNDHEAKC SCKMFEMVGL 480 LCRHIFVVFR DLERIPLKYV VNRWTKDASL KSTFEIDGVI YDQNGPKDEK KMLLNKVWSD 540 IHCCMDLAGS NMEQLTAFSQ VIDEQKQLLL SGKEKLSPQH SRRTVIESYC GSTEISEINI 600 LPPKHAKNKG SGKRIKSSKE LAMEKQEGRK CNFCGVRGDH HDTRTCPLNP KNKDKQKGKK 660 KAQQTIFSMP LKSRTKMDSK YETQLLS

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MIFKTLDAGI EFYTRYDAKV GFDTRSSSVV TARDGTKTQK LILCNREGFK NTGSQHCQSQ  60
SSADAGEGPS RPKRRRVSNR TGCRARIMFK YIGAAGYQVT TFIEKHNHNM SSVLARQFLK  120
GNRNISSVHQ KFILDCAKAN IGASKSHGLY SHIVGDYSEV GATVVDFKNV RRDLRAYILG  180
ADAQILVHNL IKKQEMCPAF AFDYEVDEDE QMSRLLWADP MSKKNFAAFG DVVSFDATYS  240
TNRYDLAMGM EPRIIVTDQD PAMKVAIPTV FKQARHRYCM WHIMCKVGEK VGPTLNKDEE  300
FRNKLNSIVW TSSLEPPDFE KQWRELMEKY NLVEHNWFKT MFEARKHWIP AYFRDVFMGG  360
LLRTTSRSES ENYTYSRFTG PQSSLVEFMM NFDSALRSQR NTNAKLNSDN EGYNPDMKTP  420
LGIEKHASIV YTITVFYQRK DGGMLHYDIM DGKNKRFTVV HNVNDHEAKC SCKMFEMVGL  480
LCRHIFVVFR DLERIPLKYV VNRWTKDASL KSTFEIDGVI YDQNGPKDEK KMLLNKVWSD  540
IHCCMDLAGS NMEQLTAFSQ VIDEQKQLLL SGKEKLSPQH SRRTVIESYC GSTEISEINI  600
LPPKHAKNKG SGKRIKSSKE LAMEKQEGRK CNFCGVRGDH HDTRTCPLNP KNKDKQKGKK  660
KAQQTIFSMP LKSRTKMDSK YETQLLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	77	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-76	FAR1 family protein