PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019171911.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 225aa    MW: 25977.6 Da    PI: 4.7524
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019171911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.71.7e-12353156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    rr+R++++ +q+++Le+ Fe ++++  e++ +LA+      rqV vWFqNrRa++k
  XP_019171911.1  3 RRRRRRLSVDQVKALEKNFEVENKLEPERKVKLAQ-----XRQVAVWFQNRRARWK 53
                    89********************************8.....6**************9 PP
2HD-ZIP_I/II101.38.3e-33490192
     HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                    +++rrls +qvk+LE++Fe e+kLeperKv+la+      rqvavWFqnrRAR+ktkqlE+dy +Lk++y++l+ ++e+L k+  +L+++l+
  XP_019171911.1  4 RRRRRLSVDQVKALEKNFEVENKLEPERKVKLAQ-----XRQVAVWFQNRRARWKTKQLERDYGVLKANYETLQLDKESLLKQICDLKAKLN 90
                    589******************************5.....7***********************************************99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MARRRRRRLS VDQVKALEKN FEVENKLEPE RKVKLAQXRQ VAVWFQNRRA RWKTKQLERD  60
YGVLKANYET LQLDKESLLK QICDLKAKLN GEMKEEGMES EGKDAKPNSD EIELNXANFK  120
DGSSDSDSSV ILNEETSSYH SSEAFLISHE PFPDCFKLSE HFMLATAVFA DAAVHKLAYP  180
PLQLVKIEEQ LSSEESCSTL FSDEQAPTLP EPDPESWNNW KEDEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
138RRRRRR
2434RRRRRLSVDQVKALEKNFEVENKLEPERKVK
3535RRRRRLSVDQVKALEKNFEVENKLEPERKVK
44856RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-39HD-ZIP family protein