PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019171924.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 205aa MW: 23072.6 Da PI: 8.9392

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019171924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.3	1.4e-34	12	105	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa+Ck++r+kC+++Cvlap fpae++++f++vhk+FG+snv+k++++l+eeer +a++slv+eA +r++dPv G +g ++++ ++l+ k++ XP_019171924.1 12 ACASCKHQRKKCTEKCVLAPFFPAEKSREFQAVHKVFGVSNVTKMVRNLKEEERGRAVESLVWEAICRQNDPVLGPLGEYRRVYEELKLYKNQY 105 7************************************************************************************999998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MQRSNGSTTS SACASCKHQR KKCTEKCVLA PFFPAEKSRE FQAVHKVFGV SNVTKMVRNL 60 KEEERGRAVE SLVWEAICRQ NDPVLGPLGE YRRVYEELKL YKNQYEPTGG MVIGWNNAAA 120 AANNNDGNNN NVVHNNNDNN NNNSLNYIHS NGNNNSVVGY NNYPINHPQN FEKLRRESDN 180 GSTVILPARQ HPINGFNQQY FIAAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	5e-45	LBD family protein