PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019171942.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 651aa    MW: 73667.2 Da    PI: 6.2449
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019171942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.41e-1092766492374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL+ cA+av+ +d + a+ +L+++++++s++gd mqRla+yf+ AL+ar+a+s++++ykal   +      +++l+a++l+   +P+ k++++
  XP_019171942.1 276 RSLLTLCAQAVAVEDIRTANDYLKHIRQHSSQTGDDMQRLAHYFADALEARIAGSGTRIYKALVKYPRY---AARALKAFHLYLSSCPFRKIANM 367
                     689************************************************************999988...899******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                       N++I   +++++ +HiiDf+i+   G+QWp+L+q L+sRp+gpp+lRiTg++ p+sg   +e+ e tg+ L+ +A++++vpfefn+ +ak++e
  XP_019171942.1 368 FSNKTITTLAQNASSLHIIDFGIGtlFGFQWPCLIQHLSSRPGGPPKLRITGIDFPQSGfrPAERAEGTGRLLTYYAQKFNVPFEFNA-IAKKWE 461
                     ***********************8446*******************************9*9***************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     ++++e+L++ +gE+l+Vn+ ++l +lld++v ++s  +rd+vLkl+ ++ P+v+++   ++ +n++ F  rf  al++ysa+fd+lea++pre +
  XP_019171942.1 462 TITVEDLKIIEGEVLVVNCLYRLRNLLDDTVVVNSlsPRDTVLKLIHDVHPDVFIHGILNSACNAPFFTSRFRAALSHYSAVFDMLEATIPREVH 556
                     *******************************999998********************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     er+ +E  ++g++++n++ace +er+er et++ W++r ++aGF ++pl+ +++k   ++l+ ++++ + ++e+ ++l+lgWk+r+L+++S+W+
  XP_019171942.1 557 ERMLIESYIFGQQAMNAIACEDTERVERPETYKMWQARNTRAGFLQLPLNREIVKMSMHMLKLYHKE-FVIDEDGHWLLLGWKGRALFALSSWK 649
                     *****************************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    
MDRGPYETTS QFNFEGGYED YDLRDQMLKW INQMLMEDNV EKQAYMFRQS AALKDAERSF  60
YELIGEEYPP SPNLHRVPDL DRNENYGDSS YYGSGDNGND DSLCPNWDSN PRDHVPVGVA  120
SSTTSQSSSS LGQGTVNDGT VDFATSTITI PDISNCIESV EKGVREASSF LPTRNSLLVD  180
GVGVEKNTGN QDLLEGRRGK KNMFREDMHL AEERCYKQSA IYVEPSVKQE EFDEVLLCSE  240
EDESNLCHSL RSVSCDSKGS NRKKSSGSKR AVVDFRSLLT LCAQAVAVED IRTANDYLKH  300
IRQHSSQTGD DMQRLAHYFA DALEARIAGS GTRIYKALVK YPRYAARALK AFHLYLSSCP  360
FRKIANMFSN KTITTLAQNA SSLHIIDFGI GTLFGFQWPC LIQHLSSRPG GPPKLRITGI  420
DFPQSGFRPA ERAEGTGRLL TYYAQKFNVP FEFNAIAKKW ETITVEDLKI IEGEVLVVNC  480
LYRLRNLLDD TVVVNSLSPR DTVLKLIHDV HPDVFIHGIL NSACNAPFFT SRFRAALSHY  540
SAVFDMLEAT IPREVHERML IESYIFGQQA MNAIACEDTE RVERPETYKM WQARNTRAGF  600
LQLPLNREIV KMSMHMLKLY HKEFVIDEDG HWLLLGWKGR ALFALSSWKP A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-162GRAS family protein